EnhancerDB
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  3. rs552741701[chr1:178028602]
Enhancers that have rs552741701[chr1:178028602]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178015665 178033840 enh12406
Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Large Intestine Lung (PC-9) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
Transcript factors that have rs552741701[chr1:178028602]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178028594 178028607 SMAD2 JASPAR yes 33390897
chr1 178028600 178028610 ID4 JASPAR yes 33390898
chr1 178028600 178028610 TCF3 JASPAR yes 33390899
chr1 178028600 178028610 TCF4 JASPAR yes 33390900
chr1 178028601 178028610 SNAI2 JASPAR yes 33390901
chr1 178028602 178028607 USF2 TRANSFAC yes 33390902
Genes associated with rs552741701[chr1:178028602], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More