EnhancerDB
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  3. rs552915162[chr1:203486765]
Enhancers that have rs552915162[chr1:203486765]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs552915162[chr1:203486765]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203486453 203488469 ZNF143 GTRD no Epithelial (MCF-7) 21369131
chr1 203486461 203488504 ZNF143 GTRD no Epithelial (MCF-7) 21369132
chr1 203486475 203488890 ZNF143 GTRD no Epithelial (MCF-7) 21369133
chr1 203486491 203488398 ZNF143 GTRD no Epithelial (MCF-7) 21369134
chr1 203486535 203488632 ZNF143 GTRD no Epithelial (MCF-7) 21369135
chr1 203486536 203488874 ZNF143 GTRD no Epithelial (MCF-7) 21369136
chr1 203486545 203488921 ZNF143 GTRD no Epithelial (MCF-7) 21369137
chr1 203486562 203488618 ZNF143 GTRD no Epithelial (MCF-7) 21369138
chr1 203486575 203488349 TCF7L2 GTRD no Colon (HCT116) 21369139
chr1 203486607 203488312 ZNF143 GTRD no Epithelial (MCF-7) 21369140
chr1 203486610 203488268 TCF7L2 GTRD no Colon (HCT116) 21369141
chr1 203486644 203486900 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369142
chr1 203486646 203486888 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369143
chr1 203486657 203488451 ZNF274 GTRD no Cervix (HeLa-S3) 21369144
chr1 203486657 203488644 ZNF274 GTRD no Cervix (HeLa-S3) 21369145
chr1 203486710 203488890 TCF7L2 GTRD no Colon (HCT116) 21369146
chr1 203486722 203488615 ZNF143 GTRD no Epithelial (MCF-7) 21369147
chr1 203486757 203486772 TFAP2A JASPAR yes 34634547
chr1 203486757 203486772 TFAP2C JASPAR yes 34634548
chr1 203486758 203486767 THAP1 JASPAR yes 34634549
chr1 203486759 203486771 TFAP2A JASPAR yes 34634550
chr1 203486759 203486771 TFAP2B JASPAR yes 34634551
chr1 203486759 203486771 TFAP2C JASPAR yes 34634552
chr1 203486759 203486774 TFAP2A JASPAR yes 34634553
chr1 203486759 203486774 TFAP2C JASPAR yes 34634554
chr1 203486765 203486784 PAX5 JASPAR yes 34634555
Genes associated with rs552915162[chr1:203486765], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More