EnhancerDB
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  3. rs552960965[chr1:201713463]
Enhancers that have rs552960965[chr1:201713463]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs552960965[chr1:201713463]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 21365291
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 107857068
chr1 201711501 201715159 ZNF143 GTRD no Epithelial (MCF-7) 107857070
chr1 201711660 201713990 ZNF274 GTRD no Bone Marrow (K562) 107857072
chr1 201711669 201715412 ZNF143 GTRD no Epithelial (MCF-7) 107857073
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 21365293
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 107857074
chr1 201713447 201713463 POU4F2 JASPAR yes 34527403
chr1 201713447 201713463 POU4F3 JASPAR yes 34527404
chr1 201713448 201713463 FOXA1 JASPAR yes 34527406
chr1 201713449 201713463 POU4F1 JASPAR yes 34527408
chr1 201713449 201713464 FOXP1 JASPAR yes 34527409
chr1 201713449 201713464 HNF1A JASPAR yes 34527410
chr1 201713450 201713464 ONECUT2 JASPAR yes 34527412
chr1 201713450 201713464 ONECUT3 JASPAR yes 34527413
chr1 201713451 201713467 POU4F2 JASPAR yes 34527417
chr1 201713451 201713467 POU4F3 JASPAR yes 34527418
chr1 201713452 201713467 FOXA1 JASPAR yes 34527420
chr1 201713453 201713465 FOXI1 JASPAR yes 34527421
chr1 201713453 201713467 POU4F1 JASPAR yes 34527422
chr1 201713453 201713468 FOXP1 JASPAR yes 34527423
chr1 201713453 201713468 HNF1A JASPAR yes 34527424
chr1 201713454 201713466 FOXC2 JASPAR yes 34527425
chr1 201713454 201713468 ONECUT2 JASPAR yes 34527426
chr1 201713454 201713468 ONECUT3 JASPAR yes 34527427
chr1 201713455 201713466 FOXB1 JASPAR yes 34527428
chr1 201713455 201713466 FOXC1 JASPAR yes 34527429
chr1 201713455 201713466 PROP1 JASPAR yes 34527430
chr1 201713455 201713471 POU4F2 JASPAR yes 34527431
chr1 201713455 201713471 POU4F3 JASPAR yes 34527432
chr1 201713456 201713471 FOXA1 JASPAR yes 34527434
chr1 201713457 201713469 FOXI1 JASPAR yes 34527435
chr1 201713457 201713471 POU4F1 JASPAR yes 34527436
chr1 201713457 201713472 FOXP1 JASPAR yes 34527437
chr1 201713457 201713472 HNF1A JASPAR yes 34527438
chr1 201713458 201713470 FOXC2 JASPAR yes 34527439
chr1 201713458 201713472 ONECUT2 JASPAR yes 34527440
chr1 201713458 201713472 ONECUT3 JASPAR yes 34527441
chr1 201713459 201713470 FOXB1 JASPAR yes 34527442
chr1 201713459 201713470 FOXC1 JASPAR yes 34527443
chr1 201713459 201713470 PROP1 JASPAR yes 34527444
chr1 201713459 201713475 POU4F2 JASPAR yes 34527445
chr1 201713459 201713475 POU4F3 JASPAR yes 34527446
chr1 201713460 201713464 YY1 TRANSFAC yes 34527447
chr1 201713460 201713475 FOXA1 JASPAR yes 34527448
chr1 201713461 201713473 FOXI1 JASPAR yes 34527449
chr1 201713461 201713475 POU4F1 JASPAR yes 34527450
chr1 201713461 201713476 FOXP1 JASPAR yes 34527451
chr1 201713461 201713476 HNF1A JASPAR yes 34527452
chr1 201713462 201713474 FOXC2 JASPAR yes 34527453
chr1 201713462 201713476 ONECUT2 JASPAR yes 34527454
chr1 201713462 201713476 ONECUT3 JASPAR yes 34527455
chr1 201713463 201713474 FOXB1 JASPAR yes 34527456
chr1 201713463 201713474 FOXC1 JASPAR yes 34527457
chr1 201713463 201713474 PROP1 JASPAR yes 34527458
chr1 201713463 201713479 POU4F2 JASPAR yes 34527459
chr1 201713463 201713479 POU4F3 JASPAR yes 34527460
Genes associated with rs552960965[chr1:201713463], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More