EnhancerDB
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  3. rs552990104[chr16:16085679]
Enhancers that have rs552990104[chr16:16085679]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 16045445 16094717 enh3913
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552990104[chr16:16085679]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 16085668 16085687 RFX2 JASPAR yes 9760448
chr16 16085672 16085688 RFX2 JASPAR yes 9760449
chr16 16085672 16085688 RFX3 JASPAR yes 9760450
chr16 16085672 16085688 RFX4 JASPAR yes 9760451
chr16 16085672 16085688 RFX5 JASPAR yes 9760452
chr16 16085673 16085692 RFX2 JASPAR yes 9760453
Genes associated with rs552990104[chr16:16085679], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More