EnhancerDB
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  3. rs553009607[chr17:41523240]
Enhancers that have rs553009607[chr17:41523240]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 41518125 41539515 enh17169
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Prostate (RWPE1) Cervix (HeLa-S3) Esophagus Astrocyte Lung (A549) Stomach Placenta Thyroid Adrenal Lung (PC-9) Pancreas Spleen Muscle (Myotube) Uterus Heart
Transcript factors that have rs553009607[chr17:41523240]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 41518935 41523274 ZNF143 GTRD no Epithelial (MCF-7) 21760279
chr17 41519281 41523404 ZNF143 GTRD no Epithelial (MCF-7) 21760293
chr17 41520571 41526147 ZNF143 GTRD no Epithelial (MCF-7) 21760302
chr17 41520594 41525787 ZNF143 GTRD no Epithelial (MCF-7) 21760304
chr17 41520752 41523269 ZBTB33 GTRD no Lung (A549) 21760308
chr17 41520753 41523251 ZNF274 GTRD no Cervix (HeLa-S3) 21760309
chr17 41520763 41523291 ZBTB33 GTRD no Lung (A549) 21760310
chr17 41520797 41523762 ZBTB33 GTRD no Lung (A549) 21760313
chr17 41520863 41526178 ZNF143 GTRD no Epithelial (MCF-7) 21760316
chr17 41520865 41523267 ZNF143 GTRD no Epithelial (MCF-7) 21760317
chr17 41520917 41523271 ZNF143 GTRD no Epithelial (MCF-7) 21760318
chr17 41522680 41523275 ZBTB33 GTRD no Lung (A549) 21760398
chr17 41523013 41524154 AR GTRD no Prostate (PC-3) 21760400
chr17 41523227 41523242 TFAP2A JASPAR yes 54347393
chr17 41523229 41523244 TFAP2C JASPAR yes 54347394
chr17 41523230 41523241 TFAP2A JASPAR yes 54347395
chr17 41523230 41523241 TFAP2B JASPAR yes 54347396
chr17 41523230 41523241 TFAP2C JASPAR yes 54347397
chr17 41523238 41523592 ZNF143 GTRD no Epithelial (MCF-7) 21760401
Genes associated with rs553009607[chr17:41523240], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More