EnhancerDB
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  3. rs553065552[chr17:39811977]
Enhancers that have rs553065552[chr17:39811977]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39800139 39815735 enh17152
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Lung (A549) Stomach Placenta Colon (HCT116) Thyroid Muscle (Myoblast) Breast Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
chr17 39811785 39812247 vista24793
VISTA
Transcript factors that have rs553065552[chr17:39811977]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39811353 39812759 ZNF274 GTRD no Blood (GM12878) 108259221
chr17 39811792 39812302 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758063
chr17 39811792 39812302 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259222
chr17 39811801 39812161 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758064
chr17 39811801 39812161 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259223
chr17 39811843 39812239 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758065
chr17 39811843 39812239 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259224
chr17 39811851 39812315 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758066
chr17 39811851 39812315 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259225
chr17 39811851 39812501 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758067
chr17 39811851 39812501 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259226
chr17 39811852 39812402 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758068
chr17 39811852 39812402 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259227
chr17 39811888 39812198 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21758069
chr17 39811888 39812198 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108259228
chr17 39811899 39812375 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758070
chr17 39811899 39812375 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259229
chr17 39811925 39812235 STAT3 UCSC Txn Factor no Conserved 108259230
chr17 39811933 39812204 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758071
chr17 39811933 39812204 TFAP2C UCSC Txn Factor no Conserved 108259231
chr17 39811933 39812204 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259232
chr17 39811959 39811980 ZNF263 JASPAR yes 21238910
chr17 39811959 39811980 ZNF263 JASPAR yes 54269118
chr17 39811964 39812142 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758072
chr17 39811964 39812142 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259233
chr17 39811966 39811981 NR2C2 JASPAR yes 21238912
chr17 39811966 39811981 NR2C2 JASPAR yes 54269120
chr17 39811974 39811979 SP1 TRANSFAC yes 21238913
chr17 39811974 39811979 SP1 TRANSFAC yes 54269121
Genes associated with rs553065552[chr17:39811977], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More