EnhancerDB
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  3. rs553085546[chr12:70403006]
Enhancers that have rs553085546[chr12:70403006]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 70369865 70403715 enh14827
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Lung (PC-9) Esophagus Astrocyte Stomach Muscle (A673) Placenta Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
Transcript factors that have rs553085546[chr12:70403006]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 70402341 70403069 ZNF143 GTRD no Epithelial (MCF-7) 21555072
chr12 70402370 70403236 ZNF274 GTRD no Cervix (HeLa-S3) 21555073
chr12 70402446 70403155 ZNF143 GTRD no Epithelial (MCF-7) 21555074
chr12 70402492 70403106 ZNF143 GTRD no Epithelial (MCF-7) 21555075
chr12 70402516 70403010 ZNF143 GTRD no Epithelial (MCF-7) 21555076
chr12 70402536 70403092 ZNF143 GTRD no Epithelial (MCF-7) 21555077
chr12 70402641 70403070 ZNF143 GTRD no Epithelial (MCF-7) 21555079
chr12 70402998 70403009 FOXA1 JASPAR yes 121754118
chr12 70402998 70403019 IRF1 JASPAR yes 121754119
chr12 70403000 70403015 IRF9 JASPAR yes 121754120
chr12 70403002 70403016 STAT1 JASPAR yes 121754121
chr12 70403002 70403017 STAT2 JASPAR yes 121754122
chr12 70403004 70403025 IRF1 JASPAR yes 121754123
chr12 70403006 70403021 IRF9 JASPAR yes 121754124
Genes associated with rs553085546[chr12:70403006], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More