EnhancerDB
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  3. rs553360200[chr1:178896975]
Enhancers that have rs553360200[chr1:178896975]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178892945 178926835 enh769
Epithelial (MCF-7) Large Intestine Ovary Esophagus Astrocyte Bone (Osteoblast) Lung Stomach Placenta Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs553360200[chr1:178896975]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178896956 178896976 RREB1 JASPAR yes 33453415
chr1 178896957 178896977 RREB1 JASPAR yes 33453417
chr1 178896958 178896978 RREB1 JASPAR yes 33453418
chr1 178896959 178896979 RREB1 JASPAR yes 33453419
chr1 178896960 178896980 RREB1 JASPAR yes 33453420
chr1 178896961 178896981 RREB1 JASPAR yes 33453421
chr1 178896962 178896982 RREB1 JASPAR yes 33453422
chr1 178896963 178896983 RREB1 JASPAR yes 33453423
chr1 178896964 178896984 RREB1 JASPAR yes 33453424
chr1 178896966 178896986 RREB1 JASPAR yes 33453425
chr1 178896967 178896987 RREB1 JASPAR yes 33453426
chr1 178896968 178896978 ZNF740 JASPAR yes 33453427
chr1 178896969 178896979 ZNF740 JASPAR yes 33453428
chr1 178896970 178896980 SP1 JASPAR yes 33453429
chr1 178896970 178896980 ZNF740 JASPAR yes 33453430
chr1 178896970 178896990 RREB1 JASPAR yes 33453431
chr1 178896971 178896981 SP1 JASPAR yes 33453432
chr1 178896971 178896981 ZNF740 JASPAR yes 33453433
chr1 178896971 178896991 RREB1 JASPAR yes 33453434
chr1 178896972 178896982 SP1 JASPAR yes 33453435
chr1 178896972 178896982 ZNF740 JASPAR yes 33453436
chr1 178896973 178896983 ZNF740 JASPAR yes 33453437
chr1 178896974 178896984 ZNF740 JASPAR yes 33453438
chr1 178896974 178896994 RREB1 JASPAR yes 33453439
chr1 178896975 178896985 SP1 JASPAR yes 33453440
chr1 178896975 178896995 RREB1 JASPAR yes 33453441
Genes associated with rs553360200[chr1:178896975], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More