EnhancerDB
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  3. rs553383468[chr12:125173410]
Enhancers that have rs553383468[chr12:125173410]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125156845 125176489 enh15094
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553383468[chr12:125173410]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125172987 125173702 TCF7L2 GTRD no Colon (HCT116) 21581734
chr12 125173048 125173578 TCF7L2 GTRD no Colon (HCT116) 21581736
chr12 125173097 125173616 ZNF143 GTRD no Epithelial (MCF-7) 21581737
chr12 125173119 125173569 TCF7L2 GTRD no Colon (HCT116) 21581738
chr12 125173123 125173440 ZNF143 GTRD no Epithelial (MCF-7) 21581739
chr12 125173161 125173740 TCF7L2 GTRD no Colon (HCT116) 21581740
chr12 125173392 125173410 ESR1 JASPAR yes 124409051
chr12 125173401 125173416 TFAP2A JASPAR yes 124409052
Genes associated with rs553383468[chr12:125173410], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More