EnhancerDB
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  3. rs553408648[chr2:228271980]
Enhancers that have rs553408648[chr2:228271980]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 228254625 228287055 enh19284
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553408648[chr2:228271980]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 228271964 228271985 IRF1 JASPAR yes 81519827
chr2 228271966 228271981 FOXP1 JASPAR yes 81519828
chr2 228271970 228271985 FOXP1 JASPAR yes 81519829
chr2 228271971 228271983 FOXC2 JASPAR yes 81519830
chr2 228271974 228271989 FOXP1 JASPAR yes 81519832
chr2 228271975 228271990 FOXP1 JASPAR yes 81519833
chr2 228271976 228271991 FOXP1 JASPAR yes 81519834
Genes associated with rs553408648[chr2:228271980], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More