EnhancerDB
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  3. rs553467628[chr1:180490606]
Enhancers that have rs553467628[chr1:180490606]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 180482964 180504974 enh12423
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
Transcript factors that have rs553467628[chr1:180490606]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 180489779 180490857 TEF1 GTRD no Bone (Osteoblast) 21353313
chr1 180490596 180490609 POU2F2 JASPAR yes 33520371
chr1 180490603 180490999 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21353321
Genes associated with rs553467628[chr1:180490606], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More