EnhancerDB
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  3. rs553491972[chr12:50919298]
Enhancers that have rs553491972[chr12:50919298]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs553491972[chr12:50919298]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50919287 50919301 SPI1 JASPAR yes 120838186
chr12 50919290 50919311 IRF1 JASPAR yes 120838189
chr12 50919291 50919312 IRF1 JASPAR yes 120838190
chr12 50919292 50919313 IRF1 JASPAR yes 120838191
chr12 50919294 50919309 FOXP1 JASPAR yes 120838192
chr12 50919295 50919310 FOXP1 JASPAR yes 120838193
chr12 50919296 50919311 FOXP1 JASPAR yes 120838194
chr12 50919297 50919312 FOXP1 JASPAR yes 120838195
chr12 50919298 50919313 FOXP1 JASPAR yes 120838196
Genes associated with rs553491972[chr12:50919298], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More