EnhancerDB
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  3. rs553576880[chr2:26285638]
Enhancers that have rs553576880[chr2:26285638]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 26273785 26313195 enh5372
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs553576880[chr2:26285638]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 26285625 26285640 HNF4A JASPAR yes 72520772
chr2 26285626 26285640 RXRB JASPAR yes 72520773
chr2 26285626 26285640 RXRG JASPAR yes 72520774
chr2 26285626 26285641 HNF4G JASPAR yes 72520775
chr2 26285626 26285641 NR2C2 JASPAR yes 72520776
Genes associated with rs553576880[chr2:26285638], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More