EnhancerDB
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  3. rs553793935[chr1:225955612]
Enhancers that have rs553793935[chr1:225955612]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 225954390 225955885 vista141
VISTA
Transcript factors that have rs553793935[chr1:225955612]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225955220 225955844 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385833
chr1 225955304 225955848 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385834
chr1 225955361 225955661 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385835
chr1 225955386 225955722 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385836
chr1 225955397 225955787 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385837
chr1 225955400 225955790 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385838
chr1 225955421 225955761 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385839
chr1 225955427 225955943 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385840
chr1 225955435 225955891 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385841
chr1 225955453 225955677 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385842
chr1 225955458 225955734 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385843
chr1 225955461 225955861 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385844
chr1 225955470 225955746 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385845
chr1 225955482 225955832 ZNF274 GTRD no Liver (HepG2) 21385846
chr1 225955483 225955773 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385847
chr1 225955491 225955771 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385848
chr1 225955527 225955817 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385849
chr1 225955596 225955616 RREB1 JASPAR yes 35769673
chr1 225955596 225955616 RREB1 JASPAR yes 71159934
chr1 225955605 225955815 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385850
chr1 225955606 225955615 SP1 TRANSFAC yes 35769674
chr1 225955606 225955615 SP1 TRANSFAC yes 71159935
chr1 225955607 225955613 SP1 TRANSFAC yes 35769675
chr1 225955607 225955613 SP1 TRANSFAC yes 71159936
chr1 225955607 225955617 SP1 JASPAR yes 35769676
chr1 225955607 225955617 SP1 JASPAR yes 71159937
chr1 225955608 225955615 SP1 TRANSFAC yes 35769677
chr1 225955608 225955615 SP1 TRANSFAC yes 71159938
chr1 225955609 225955614 SP1 TRANSFAC yes 35769678
chr1 225955609 225955614 SP1 TRANSFAC yes 71159939
chr1 225955609 225955615 SP1 TRANSFAC yes 35769679
chr1 225955609 225955615 SP1 TRANSFAC yes 71159940
chr1 225955611 225955624 ELF1 JASPAR yes 35769680
chr1 225955611 225955624 ELF1 JASPAR yes 71159941
chr1 225955612 225955624 ELF4 JASPAR yes 35769681
chr1 225955612 225955624 ELF4 JASPAR yes 71159942
chr1 225955612 225955625 ELF3 JASPAR yes 35769682
chr1 225955612 225955625 ELF3 JASPAR yes 71159943
Genes associated with rs553793935[chr1:225955612], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More