EnhancerDB
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  3. rs553804671[chr6:11596584]
Enhancers that have rs553804671[chr6:11596584]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 11583745 11623555 enh23028
Brain (SK-N-MC) Astrocyte Uterus Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Lung Muscle (A673) Heart
Transcript factors that have rs553804671[chr6:11596584]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 11596566 11596587 IRF1 JASPAR yes 99898388
chr6 11596567 11596588 IRF1 JASPAR yes 99898390
chr6 11596568 11596589 IRF1 JASPAR yes 99898392
chr6 11596572 11596586 IRF7 JASPAR yes 99898393
chr6 11596572 11596593 IRF1 JASPAR yes 99898394
chr6 11596573 11596588 FOXP1 JASPAR yes 99898395
chr6 11596573 11596594 IRF1 JASPAR yes 99898396
chr6 11596574 11596589 PRDM1 JASPAR yes 99898397
chr6 11596574 11596595 IRF1 JASPAR yes 99898398
chr6 11596578 11596599 IRF1 JASPAR yes 99898399
chr6 11596579 11596594 FOXP1 JASPAR yes 99898400
chr6 11596581 11596596 FOXP1 JASPAR yes 99898401
chr6 11596583 11596598 FOXP1 JASPAR yes 99898402
chr6 11596584 11596599 FOXP1 JASPAR yes 99898403
Genes associated with rs553804671[chr6:11596584], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More