EnhancerDB
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  3. rs553849080[chr1:16508608]
Enhancers that have rs553849080[chr1:16508608]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 16508402 16508642 vista526
VISTA
Transcript factors that have rs553849080[chr1:16508608]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16508603 16508608 SP1 TRANSFAC yes 27032327
chr1 16508603 16508608 SP1 TRANSFAC yes 118238910
chr1 16508604 16508609 SP1 TRANSFAC yes 27032328
chr1 16508604 16508609 SP1 TRANSFAC yes 118238911
Genes associated with rs553849080[chr1:16508608], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More