EnhancerDB
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  3. rs553937227[chr19:13140547]
Enhancers that have rs553937227[chr19:13140547]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13138760 13157647 enh17929
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553937227[chr19:13140547]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13139579 13141042 TCF7L2 GTRD no Colon (HCT116) 21850169
chr19 13139579 13141042 TCF7L2 GTRD no Colon (HCT116) 108387482
chr19 13139783 13141220 TCF7L2 GTRD no Colon (HCT116) 21850170
chr19 13139783 13141220 TCF7L2 GTRD no Colon (HCT116) 108387483
chr19 13139832 13141115 TCF7L2 GTRD no Colon (HCT116) 21850171
chr19 13139832 13141115 TCF7L2 GTRD no Colon (HCT116) 108387484
chr19 13140132 13140840 TCF7L2 GTRD no Colon (HCT116) 21850172
chr19 13140132 13140840 TCF7L2 GTRD no Colon (HCT116) 108387485
chr19 13140499 13140985 TCF7L2 GTRD no Colon (HCT116) 21850173
chr19 13140499 13140985 TCF7L2 GTRD no Colon (HCT116) 108387486
chr19 13140536 13141171 TCF7L2 GTRD no Colon (HCT116) 21850174
chr19 13140536 13141171 TCF7L2 GTRD no Colon (HCT116) 108387487
chr19 13140545 13140550 USF2 TRANSFAC yes 112502497
Genes associated with rs553937227[chr19:13140547], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More