EnhancerDB
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  3. rs553987804[chr17:59410986]
Enhancers that have rs553987804[chr17:59410986]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs553987804[chr17:59410986]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59410966 59410987 IRF1 JASPAR yes 55149843
chr17 59410970 59410991 IRF1 JASPAR yes 55149849
chr17 59410971 59410986 FOXP1 JASPAR yes 55149850
chr17 59410972 59410987 STAT2 JASPAR yes 55149851
chr17 59410974 59410995 IRF1 JASPAR yes 55149852
chr17 59410975 59410990 FOXP1 JASPAR yes 55149853
chr17 59410975 59410996 IRF1 JASPAR yes 55149854
chr17 59410976 59410991 FOXP1 JASPAR yes 55149855
chr17 59410976 59410997 IRF1 JASPAR yes 55149856
chr17 59410980 59411001 IRF1 JASPAR yes 55149857
chr17 59410981 59410996 FOXP1 JASPAR yes 55149858
chr17 59410983 59410998 FOXP1 JASPAR yes 55149859
chr17 59410985 59411000 FOXP1 JASPAR yes 55149860
chr17 59410986 59411001 FOXP1 JASPAR yes 55149861
Genes associated with rs553987804[chr17:59410986], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More