EnhancerDB
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  3. rs554051820[chr1:19328393]
Enhancers that have rs554051820[chr1:19328393]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19322701 19342495 enh11568
Bone Marrow (K562) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs554051820[chr1:19328393]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19328375 19328395 RREB1 JASPAR yes 27169432
chr1 19328375 19328396 IRF1 JASPAR yes 27169433
chr1 19328376 19328397 IRF1 JASPAR yes 27169436
chr1 19328380 19328394 IRF7 JASPAR yes 27169439
chr1 19328381 19328401 RREB1 JASPAR yes 27169440
chr1 19328381 19328402 IRF1 JASPAR yes 27169441
chr1 19328382 19328397 FOXP1 JASPAR yes 27169443
chr1 19328382 19328403 IRF1 JASPAR yes 27169444
chr1 19328383 19328398 STAT2 JASPAR yes 27169445
chr1 19328386 19328398 IRF1 JASPAR yes 27169446
chr1 19328387 19328408 IRF1 JASPAR yes 27169447
chr1 19328388 19328394 TCF4 TRANSFAC yes 27169448
chr1 19328388 19328403 FOXP1 JASPAR yes 27169449
chr1 19328389 19328400 FOXP2 JASPAR yes 27169450
chr1 19328389 19328401 FOXC2 JASPAR yes 27169451
Genes associated with rs554051820[chr1:19328393], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More