EnhancerDB
  1. Home
  2. SNP
  3. rs554190872[chr1:53877398]
Enhancers that have rs554190872[chr1:53877398]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 53871953 53884901 enh26703
Prostate (PC-3) Brain (SK-N-MC) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Uterus Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Stomach
Transcript factors that have rs554190872[chr1:53877398]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 53877386 53877405 RFX2 JASPAR yes 28929835
chr1 53877388 53877403 RFX5 JASPAR yes 28929836
Genes associated with rs554190872[chr1:53877398], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More