EnhancerDB
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  3. rs554242829[chr1:172900669]
Enhancers that have rs554242829[chr1:172900669]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172893305 172912815 enh12378
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Brain (SK-N-MC) Esophagus Astrocyte Brain (SK-N-SH) Stomach Muscle (A673) Placenta Muscle (Myoblast) Spleen Uterus Heart
Transcript factors that have rs554242829[chr1:172900669]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172900656 172900671 HNF1A JASPAR yes 33167903
chr1 172900657 172900669 HNF1B JASPAR yes 33167904
chr1 172900657 172900673 POU4F2 JASPAR yes 33167905
chr1 172900667 172900673 GATA3 JASPAR yes 33167906
Genes associated with rs554242829[chr1:172900669], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More