EnhancerDB
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  3. rs554394224[chr19:2540264]
Enhancers that have rs554394224[chr19:2540264]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554394224[chr19:2540264]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2539983 2541557 ZBTB33 GTRD no Lung (A549) 21836484
chr19 2539983 2541557 ZBTB33 GTRD no Lung (A549) 108361546
chr19 2540150 2541415 ZNF274 GTRD no Liver (HepG2) 21836485
chr19 2540150 2541415 ZNF274 GTRD no Liver (HepG2) 108361547
chr19 2540170 2541619 ZNF143 GTRD no Epithelial (MCF-7) 21836486
chr19 2540170 2541619 ZNF143 GTRD no Epithelial (MCF-7) 108361548
chr19 2540177 2543122 TCF7L2 GTRD no Colon (HCT116) 21836487
chr19 2540177 2543122 TCF7L2 GTRD no Colon (HCT116) 108361549
chr19 2540193 2541330 TCF7L2 GTRD no Colon (HCT116) 21836488
chr19 2540193 2541330 TCF7L2 GTRD no Colon (HCT116) 108361550
chr19 2540208 2543082 TCF7L2 GTRD no Colon (HCT116) 21836489
chr19 2540208 2543082 TCF7L2 GTRD no Colon (HCT116) 108361551
chr19 2540226 2541499 P63 GTRD no Skin (Keratinocyte) 108361552
chr19 2540241 2543099 TCF7L2 GTRD no Colon (HCT116) 21836490
chr19 2540241 2543099 TCF7L2 GTRD no Colon (HCT116) 108361553
chr19 2540255 2541475 ZBTB33 GTRD no Lung (A549) 21836491
chr19 2540255 2541475 ZBTB33 GTRD no Lung (A549) 108361554
chr19 2540258 2540264 NFE2 TRANSFAC yes 112071770
chr19 2540261 2541462 ZNF143 GTRD no Epithelial (MCF-7) 21836492
chr19 2540261 2541462 ZNF143 GTRD no Epithelial (MCF-7) 108361555
chr19 2540262 2540272 SP1 JASPAR yes 112071771
Genes associated with rs554394224[chr19:2540264], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More