EnhancerDB
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  3. rs554498113[chr19:13952906]
Enhancers that have rs554498113[chr19:13952906]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554498113[chr19:13952906]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13948875 13955635 POLR2A UCSC Txn Factor no Conserved 108390133
chr19 13948875 13955635 POLR2A UCSC Txn Factor no Conserved 108390134
chr19 13949228 13953924 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21851739
chr19 13949337 13954090 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21851742
chr19 13951579 13953680 TCF7L2 GTRD no Colon (HCT116) 21851877
chr19 13951621 13953056 ZNF274 GTRD no Bone Marrow (K562) 21851881
chr19 13951635 13954235 ZNF274 GTRD no Blood (GM12878) 21851886
chr19 13951637 13953815 ZNF274 GTRD no Bone Marrow (K562) 21851887
chr19 13951640 13953891 ZNF274 GTRD no Cervix (HeLa-S3) 21851889
chr19 13951646 13953826 ZNF274 GTRD no Bone Marrow (K562) 21851890
chr19 13951679 13953534 ZNF274 GTRD no Blood (GM12878) 21851895
chr19 13951684 13953486 ZNF274 GTRD no Blood (GM12878) 21851897
chr19 13951712 13953059 ZNF143 GTRD no Epithelial (MCF-7) 21851899
chr19 13951772 13953797 ZNF274 GTRD no Bone Marrow (K562) 21851910
chr19 13951794 13953699 ZNF274 GTRD no Bone Marrow (K562) 21851921
chr19 13951801 13952909 ZNF274 GTRD no Liver (HepG2) 21851924
chr19 13951823 13953780 ZNF274 GTRD no Bone Marrow (K562) 21851929
chr19 13951831 13953250 TCF7L2 GTRD no Colon (HCT116) 21851935
chr19 13951838 13954705 TCF7L2 GTRD no Colon (HCT116) 21851938
chr19 13951838 13954705 TCF7L2 GTRD no Colon (HCT116) 108390135
chr19 13951839 13952938 ZNF143 GTRD no Epithelial (MCF-7) 21851939
chr19 13951854 13953700 TCF7L2 GTRD no Colon (HCT116) 21851944
chr19 13951871 13953162 TCF7L2 GTRD no Colon (HCT116) 21851951
chr19 13951887 13954603 TCF7L2 GTRD no Colon (HCT116) 21851957
chr19 13951887 13954603 TCF7L2 GTRD no Colon (HCT116) 108390136
chr19 13951893 13954672 TCF7L2 GTRD no Colon (HCT116) 21851961
chr19 13951893 13954672 TCF7L2 GTRD no Colon (HCT116) 108390137
chr19 13951917 13953672 ZNF274 GTRD no Bone Marrow (K562) 21851968
chr19 13951936 13954470 TCF7L2 GTRD no Colon (HCT116) 21851976
chr19 13951936 13954470 TCF7L2 GTRD no Colon (HCT116) 108390138
chr19 13952028 13953951 ZNF274 GTRD no Bone Marrow (K562) 21852006
chr19 13952122 13953921 ZNF143 GTRD no Epithelial (MCF-7) 21852032
chr19 13952213 13953203 TCF7L2 GTRD no Colon (HCT116) 21852051
chr19 13952225 13952935 ERG GTRD no Prostate (RWPE1) 21852053
chr19 13952247 13952935 TCF7L2 GTRD no Colon (HCT116) 21852056
chr19 13952446 13952991 TCF7L2 GTRD no Colon (HCT116) 21852073
chr19 13952455 13953659 ZNF274 GTRD no Bone Marrow (K562) 21852075
chr19 13952518 13953362 TCF7L2 GTRD no Colon (HCT116) 21852077
chr19 13952705 13952986 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852079
chr19 13952798 13953844 ZNF274 GTRD no Bone Marrow (K562) 21852080
chr19 13952866 13954773 ZNF143 GTRD no Epithelial (MCF-7) 21852081
chr19 13952866 13954773 ZNF143 GTRD no Epithelial (MCF-7) 108390139
chr19 13952867 13953989 AR GTRD no Prostate (PC-3) 21852082
chr19 13952874 13953951 ZNF274 GTRD no Bone Marrow (K562) 21852083
chr19 13952879 13954270 ZNF274 GTRD no Blood (GM12878) 21852084
chr19 13952881 13954705 ZNF143 GTRD no Epithelial (MCF-7) 21852085
chr19 13952881 13954705 ZNF143 GTRD no Epithelial (MCF-7) 108390140
chr19 13952890 13954784 ZNF143 GTRD no Epithelial (MCF-7) 21852086
chr19 13952890 13954784 ZNF143 GTRD no Epithelial (MCF-7) 108390141
chr19 13952897 13953712 ZNF274 GTRD no Bone Marrow (K562) 21852087
chr19 13952900 13953516 ZNF274 GTRD no Blood (GM12878) 21852088
chr19 13952903 13953341 ZNF274 GTRD no Blood (GM12878) 21852089
Genes associated with rs554498113[chr19:13952906], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More