EnhancerDB
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  3. rs554506163[chr3:128949960]
Enhancers that have rs554506163[chr3:128949960]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 128941525 128955643 enh7525
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs554506163[chr3:128949960]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 128949949 128949967 NR3C1 JASPAR yes 5647437
chr3 128949955 128949976 IRF1 JASPAR yes 5647438
chr3 128949956 128949968 FOXC2 JASPAR yes 5647439
chr3 128949957 128949968 FOXC1 JASPAR yes 5647440
chr3 128949957 128949972 PRDM1 JASPAR yes 5647441
chr3 128949957 128949972 STAT2 JASPAR yes 5647442
chr3 128949958 128949962 YY1 TRANSFAC yes 5647443
chr3 128949958 128949972 STAT1 JASPAR yes 5647444
chr3 128949959 128949980 IRF1 JASPAR yes 5647445
chr3 128949960 128949975 FOXP1 JASPAR yes 5647446
Genes associated with rs554506163[chr3:128949960], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More