EnhancerDB
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  3. rs554530194[chr1:203483260]
Enhancers that have rs554530194[chr1:203483260]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554530194[chr1:203483260]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203482754 203483404 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369118
chr1 203482802 203484325 ZNF143 GTRD no Epithelial (MCF-7) 21369119
chr1 203482808 203484275 ZNF143 GTRD no Epithelial (MCF-7) 21369120
chr1 203482960 203483492 TCF7L2 GTRD no Colon (HCT116) 21369121
chr1 203483059 203483609 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369122
chr1 203483125 203483984 ZNF143 GTRD no Epithelial (MCF-7) 21369123
chr1 203483158 203483534 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369124
chr1 203483170 203483526 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21369125
chr1 203483196 203484004 TCF7L2 GTRD no Colon (HCT116) 21369126
chr1 203483214 203483670 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369127
chr1 203483255 203483270 ZIC3 JASPAR yes 34634085
chr1 203483255 203483270 ZIC4 JASPAR yes 34634086
chr1 203483256 203483266 SP1 JASPAR yes 34634087
chr1 203483256 203483270 GLIS2 JASPAR yes 34634088
chr1 203483256 203483270 ZIC1 JASPAR yes 34634089
chr1 203483259 203483264 SP1 TRANSFAC yes 34634090
chr1 203483259 203483265 SP1 TRANSFAC yes 34634091
chr1 203483259 203483269 SP1 JASPAR yes 34634092
chr1 203483260 203483270 ZNF740 JASPAR yes 34634093
Genes associated with rs554530194[chr1:203483260], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More