EnhancerDB
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  3. rs554546904[chr1:27466288]
Enhancers that have rs554546904[chr1:27466288]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27456674 27477960 enh171
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554546904[chr1:27466288]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27466281 27466295 ONECUT3 JASPAR yes 27680836
chr1 27466282 27466291 SOX9 JASPAR yes 27680837
chr1 27466282 27466303 IRF1 JASPAR yes 27680838
chr1 27466283 27466298 FOXP1 JASPAR yes 27680839
chr1 27466283 27466304 IRF1 JASPAR yes 27680840
chr1 27466284 27466293 SRY JASPAR yes 27680841
chr1 27466284 27466296 FOXC2 JASPAR yes 27680842
chr1 27466285 27466300 FOXP1 JASPAR yes 27680843
chr1 27466287 27466302 FOXP1 JASPAR yes 27680844
chr1 27466288 27466303 FOXP1 JASPAR yes 27680845
Genes associated with rs554546904[chr1:27466288], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More