EnhancerDB
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  3. rs554635404[chr12:125038634]
Enhancers that have rs554635404[chr12:125038634]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125019933 125050377 enh2674
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr12 125038421 125038650 vista15295
VISTA
Transcript factors that have rs554635404[chr12:125038634]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125038425 125039011 TCF7L2 GTRD no Colon (HCT116) 21581020
chr12 125038425 125039011 TCF7L2 GTRD no Colon (HCT116) 108068913
chr12 125038631 125038640 SP1 TRANSFAC yes 82496014
chr12 125038631 125038640 SP1 TRANSFAC yes 124393213
chr12 125038634 125038640 NFE2 TRANSFAC yes 82496015
chr12 125038634 125038640 NFE2 TRANSFAC yes 124393214
Genes associated with rs554635404[chr12:125038634], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More