EnhancerDB
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  3. rs554726275[chr1:2182325]
Enhancers that have rs554726275[chr1:2182325]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 2162230 2193653 enh11423
Bone Marrow (K562) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554726275[chr1:2182325]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 2182319 2182334 ZIC3 JASPAR yes 26226919
chr1 2182319 2182334 ZIC4 JASPAR yes 26226920
chr1 2182320 2182332 TFAP2A JASPAR yes 26226921
chr1 2182320 2182332 TFAP2B JASPAR yes 26226922
chr1 2182320 2182332 TFAP2C JASPAR yes 26226923
chr1 2182320 2182333 TFAP2A JASPAR yes 26226924
chr1 2182320 2182333 TFAP2B JASPAR yes 26226925
chr1 2182320 2182333 TFAP2C JASPAR yes 26226926
chr1 2182320 2182334 GLIS2 JASPAR yes 26226927
chr1 2182320 2182334 ZIC1 JASPAR yes 26226928
chr1 2182321 2182330 TFAP2A JASPAR yes 26226929
chr1 2182321 2182334 TFAP2A JASPAR yes 26226930
chr1 2182321 2182334 TFAP2C JASPAR yes 26226931
chr1 2182324 2182344 PPARG JASPAR yes 26226932
Genes associated with rs554726275[chr1:2182325], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More