EnhancerDB
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  3. rs554809401[chr1:201740922]
Enhancers that have rs554809401[chr1:201740922]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs554809401[chr1:201740922]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201738081 201742956 ZNF143 GTRD no Epithelial (MCF-7) 107857096
chr1 201738081 201742956 ZNF143 GTRD no Epithelial (MCF-7) 107857097
chr1 201738082 201743153 ZNF143 GTRD no Epithelial (MCF-7) 107857098
chr1 201738082 201743153 ZNF143 GTRD no Epithelial (MCF-7) 107857099
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857100
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857101
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857102
chr1 201738449 201743729 ZNF143 GTRD no Epithelial (MCF-7) 107857103
chr1 201738449 201743729 ZNF143 GTRD no Epithelial (MCF-7) 107857104
chr1 201738462 201742325 ZNF143 GTRD no Epithelial (MCF-7) 107857105
chr1 201738601 201743177 ZNF143 GTRD no Epithelial (MCF-7) 107857106
chr1 201738601 201743177 ZNF143 GTRD no Epithelial (MCF-7) 107857107
chr1 201738669 201741383 ZNF143 GTRD no Epithelial (MCF-7) 107857108
chr1 201738751 201743050 ZNF143 GTRD no Epithelial (MCF-7) 107857109
chr1 201738751 201743050 ZNF143 GTRD no Epithelial (MCF-7) 107857110
chr1 201738871 201741592 TCF7L2 GTRD no Colon (HCT116) 107857113
chr1 201738881 201741573 ZNF143 GTRD no Epithelial (MCF-7) 107857114
chr1 201738936 201741261 ZNF143 GTRD no Epithelial (MCF-7) 107857116
chr1 201738964 201741430 ZNF143 GTRD no Epithelial (MCF-7) 107857118
chr1 201738972 201742525 ZNF143 GTRD no Epithelial (MCF-7) 107857119
chr1 201739012 201741628 ZNF143 GTRD no Epithelial (MCF-7) 107857120
chr1 201739109 201741275 ZNF143 GTRD no Epithelial (MCF-7) 107857121
chr1 201739118 201741510 ZNF143 GTRD no Epithelial (MCF-7) 107857122
chr1 201739213 201741305 TCF7L2 GTRD no Colon (HCT116) 107857127
chr1 201739293 201741248 TCF7L2 GTRD no Colon (HCT116) 107857129
chr1 201739466 201742269 ZNF143 GTRD no Epithelial (MCF-7) 107857137
chr1 201740911 201740922 HOXC11 JASPAR yes 34531702
chr1 201740911 201740922 HOXC12 JASPAR yes 34531703
chr1 201740912 201740922 HOXD11 JASPAR yes 34531704
Genes associated with rs554809401[chr1:201740922], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More