EnhancerDB
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  3. rs554879346[chr17:39811231]
Enhancers that have rs554879346[chr17:39811231]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39800139 39815735 enh17152
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Lung (A549) Stomach Placenta Colon (HCT116) Thyroid Muscle (Myoblast) Breast Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
Transcript factors that have rs554879346[chr17:39811231]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39811224 39811236 TFAP2A JASPAR yes 54269056
chr17 39811224 39811236 TFAP2B JASPAR yes 54269057
chr17 39811224 39811236 TFAP2C JASPAR yes 54269058
chr17 39811231 39811235 LFA1 TRANSFAC yes 54269059
Genes associated with rs554879346[chr17:39811231], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More