EnhancerDB
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  3. rs554889180[chr1:54767727]
Enhancers that have rs554889180[chr1:54767727]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54761072 54782679 enh11866
Liver (HepG2) Brain (SK-N-SH) Large Intestine Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs554889180[chr1:54767727]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54767711 54767731 RREB1 JASPAR yes 28970641
chr1 54767712 54767732 RREB1 JASPAR yes 28970642
chr1 54767713 54767733 RREB1 JASPAR yes 28970643
chr1 54767714 54767734 RREB1 JASPAR yes 28970644
chr1 54767716 54767736 RREB1 JASPAR yes 28970645
chr1 54767719 54767729 ZNF740 JASPAR yes 28970647
chr1 54767719 54767733 PLAG1 JASPAR yes 28970648
chr1 54767721 54767731 SP1 JASPAR yes 28970649
chr1 54767721 54767736 NR2C2 JASPAR yes 28970650
chr1 54767724 54767729 SP1 TRANSFAC yes 28970651
chr1 54767724 54767734 ZNF740 JASPAR yes 28970652
chr1 54767725 54767735 SP1 JASPAR yes 28970653
chr1 54767725 54767735 ZNF740 JASPAR yes 28970654
Genes associated with rs554889180[chr1:54767727], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More