EnhancerDB
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  3. rs554901701[chr12:65027474]
Enhancers that have rs554901701[chr12:65027474]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65008245 65038815 enh2404
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554901701[chr12:65027474]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65027472 65027483 HOXA10 JASPAR yes 121418634
chr12 65027473 65027482 CDX1 JASPAR yes 121418635
chr12 65027473 65027483 HOXA13 JASPAR yes 121418636
Genes associated with rs554901701[chr12:65027474], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More