EnhancerDB
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  3. rs554954399[chr17:71297206]
Enhancers that have rs554954399[chr17:71297206]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 71282705 71302156 enh17360
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554954399[chr17:71297206]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 71297189 71297210 IRF1 JASPAR yes 55860234
chr17 71297190 71297211 IRF1 JASPAR yes 55860235
chr17 71297191 71297212 IRF1 JASPAR yes 55860236
chr17 71297192 71297207 FOXP1 JASPAR yes 55860237
chr17 71297193 71297208 FOXP1 JASPAR yes 55860238
chr17 71297194 71297209 FOXP1 JASPAR yes 55860240
chr17 71297195 71297210 FOXP1 JASPAR yes 55860241
chr17 71297196 71297211 FOXP1 JASPAR yes 55860242
chr17 71297196 71297217 IRF1 JASPAR yes 55860243
chr17 71297197 71297212 FOXP1 JASPAR yes 55860244
chr17 71297198 71297213 FOXP1 JASPAR yes 55860245
chr17 71297198 71297219 IRF1 JASPAR yes 55860246
Genes associated with rs554954399[chr17:71297206], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More