EnhancerDB
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  3. rs555453550[chr16:85582702]
Enhancers that have rs555453550[chr16:85582702]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85541745 85623813 enh16872
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs555453550[chr16:85582702]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85580040 85582876 ZNF143 GTRD no Epithelial (MCF-7) 21728618
chr16 85581547 85584240 TCF7L2 GTRD no Colon (HCT116) 21728643
chr16 85581629 85582889 TCF7L2 GTRD no Colon (HCT116) 21728645
chr16 85581683 85583875 ZNF274 GTRD no Bone Marrow (K562) 21728646
chr16 85581994 85583977 ZNF274 GTRD no Bone Marrow (K562) 21728648
chr16 85582104 85582711 ZNF274 GTRD no Bone Marrow (K562) 21728650
chr16 85582222 85583046 ZNF274 GTRD no Bone Marrow (K562) 21728653
chr16 85582701 85582709 BARX1 JASPAR yes 12075137
chr16 85582701 85582709 BSX JASPAR yes 12075138
chr16 85582701 85582709 ISL2 JASPAR yes 12075139
chr16 85582701 85582709 LMX1B JASPAR yes 12075140
chr16 85582701 85582709 MSX1 JASPAR yes 12075141
chr16 85582701 85582709 MSX2 JASPAR yes 12075142
chr16 85582702 85582713 DUX4 JASPAR yes 12075143
Genes associated with rs555453550[chr16:85582702], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More