EnhancerDB
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  3. rs555562109[chr1:209585434]
Enhancers that have rs555562109[chr1:209585434]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs555562109[chr1:209585434]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209584773 209586664 AR GTRD no Prostate (PC-3) 21375296
chr1 209584773 209586664 AR GTRD no Prostate (PC-3) 107865744
chr1 209585413 209585434 IRF1 JASPAR yes 34973240
chr1 209585423 209585435 IRF1 JASPAR yes 34973243
chr1 209585423 209585437 IRF7 JASPAR yes 34973244
chr1 209585425 209585440 FOXP1 JASPAR yes 34973246
chr1 209585432 209585445 POU3F3 JASPAR yes 34973247
chr1 209585432 209585446 POU1F1 JASPAR yes 34973248
chr1 209585433 209585445 POU3F2 JASPAR yes 34973249
Genes associated with rs555562109[chr1:209585434], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More