EnhancerDB
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  3. rs555978860[chr12:113668088]
Enhancers that have rs555978860[chr12:113668088]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 113663085 113691755 enh2610
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs555978860[chr12:113668088]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 113667509 113668193 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21574274
chr12 113667509 113668193 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108060332
chr12 113667648 113668104 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21574298
chr12 113667648 113668104 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108060359
chr12 113667700 113668140 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21574302
chr12 113667700 113668140 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108060363
chr12 113667701 113668091 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21574303
chr12 113667701 113668091 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108060364
chr12 113667731 113668107 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21574305
chr12 113667731 113668107 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108060366
chr12 113667795 113668170 ZNF274 GTRD no Blood (GM12878) 21574307
chr12 113667795 113668170 ZNF274 GTRD no Blood (GM12878) 108060368
chr12 113668076 113668091 LEF1 JASPAR yes 123817748
chr12 113668082 113668103 IRF1 JASPAR yes 123817749
chr12 113668083 113668104 IRF1 JASPAR yes 123817750
chr12 113668084 113668105 IRF1 JASPAR yes 123817751
chr12 113668085 113668100 FOXP1 JASPAR yes 123817752
chr12 113668085 113668106 IRF1 JASPAR yes 123817753
chr12 113668086 113668107 IRF1 JASPAR yes 123817754
chr12 113668087 113668102 FOXP1 JASPAR yes 123817755
chr12 113668087 113668108 IRF1 JASPAR yes 123817756
chr12 113668088 113668103 FOXP1 JASPAR yes 123817757
chr12 113668088 113668109 IRF1 JASPAR yes 123817758
Genes associated with rs555978860[chr12:113668088], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More