EnhancerDB
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  3. rs556001975[chr11:130378538]
Enhancers that have rs556001975[chr11:130378538]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 130376930 130403235 enh14405
Astrocyte Pancreas Uterus Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs556001975[chr11:130378538]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 130378096 130378607 SOX2 GTRD no Neural Stem Cells (H9) 21523897
chr11 130378196 130378583 SOX2 GTRD no Neural Stem Cells (H9) 21523898
chr11 130378227 130378609 SOX2 GTRD no Neural Stem Cells (H9) 21523899
chr11 130378239 130378565 SOX2 GTRD no Neural Stem Cells (H9) 21523900
chr11 130378262 130378585 SOX2 GTRD no Neural Stem Cells (H9) 21523901
chr11 130378272 130378588 SOX2 GTRD no Neural Stem Cells (H9) 21523902
chr11 130378374 130378561 SOX2 GTRD no Neural Stem Cells (H9) 21523903
Genes associated with rs556001975[chr11:130378538], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More