EnhancerDB
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  3. rs556005580[chr3:58004398]
Enhancers that have rs556005580[chr3:58004398]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 57992811 58015944 enh20646
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Uterus Thyroid Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs556005580[chr3:58004398]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 58004388 58004398 NFIA JASPAR yes 2664828
chr3 58004389 58004398 NFIX JASPAR yes 2664829
chr3 58004389 58004410 REST JASPAR yes 2664830
chr3 58004390 58004409 REST JASPAR yes 2664832
Genes associated with rs556005580[chr3:58004398], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More