EnhancerDB
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  3. rs556065683[chr17:71286958]
Enhancers that have rs556065683[chr17:71286958]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 71282705 71302156 enh17360
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr17 71286924 71287020 vista25858
VISTA
Transcript factors that have rs556065683[chr17:71286958]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 71286540 71287018 SOX2 GTRD no Neural Stem Cells (H9) 108290922
chr17 71286562 71286988 SOX2 GTRD no Neural Stem Cells (H9) 108290923
chr17 71286747 71287247 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107689355
chr17 71286747 71287247 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108290924
chr17 71286916 71287065 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107689356
chr17 71286916 71287065 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108290925
chr17 71286949 71286964 JUND JASPAR yes 21289922
chr17 71286949 71286964 JUND JASPAR yes 55858643
chr17 71286950 71286963 JUN JASPAR yes 21289923
chr17 71286950 71286963 JUN JASPAR yes 55858644
chr17 71286952 71286964 JDP2 JASPAR yes 21289924
chr17 71286952 71286964 JDP2 JASPAR yes 55858645
Genes associated with rs556065683[chr17:71286958], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More