EnhancerDB
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  3. rs556180142[chr1:225643012]
Enhancers that have rs556180142[chr1:225643012]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs556180142[chr1:225643012]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225643002 225643012 TBX21 JASPAR yes 35742428
chr1 225643003 225643012 ZEB1 JASPAR yes 35742434
chr1 225643003 225643015 PKNOX1 JASPAR yes 35742435
chr1 225643003 225643015 TGIF1 JASPAR yes 35742436
chr1 225643003 225643016 ZBTB18 JASPAR yes 35742437
chr1 225643004 225643014 FIGLA JASPAR yes 35742438
chr1 225643004 225643014 ID4 JASPAR yes 35742439
chr1 225643004 225643014 TCF3 JASPAR yes 35742440
chr1 225643004 225643014 TCF4 JASPAR yes 35742441
chr1 225643005 225643014 SNAI2 JASPAR yes 35742442
Genes associated with rs556180142[chr1:225643012], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More