EnhancerDB
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  3. rs556379832[chr6:12324316]
Enhancers that have rs556379832[chr6:12324316]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12317105 12339155 enh23034
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Blood (GM12878) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs556379832[chr6:12324316]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12324295 12324316 IRF1 JASPAR yes 99960537
chr6 12324296 12324317 IRF1 JASPAR yes 99960539
chr6 12324300 12324321 IRF1 JASPAR yes 99960542
chr6 12324301 12324316 FOXP1 JASPAR yes 99960543
chr6 12324302 12324323 IRF1 JASPAR yes 99960544
chr6 12324304 12324318 STAT1 JASPAR yes 99960545
chr6 12324304 12324319 PRDM1 JASPAR yes 99960546
chr6 12324304 12324319 STAT2 JASPAR yes 99960547
chr6 12324306 12324321 PRDM1 JASPAR yes 99960548
chr6 12324314 12324664 ELK1 UCSC Txn Factor no Conserved 108538531
Genes associated with rs556379832[chr6:12324316], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More