EnhancerDB
  1. Home
  2. SNP
  3. rs556389682[chr2:38919046]
Enhancers that have rs556389682[chr2:38919046]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs556389682[chr2:38919046]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38919039 38919050 CDX2 JASPAR yes 73165205
chr2 38919039 38919054 FOXP1 JASPAR yes 73165206
chr2 38919041 38919051 HOXA13 JASPAR yes 73165207
chr2 38919043 38919047 TEAD2 TRANSFAC yes 73165208
chr2 38919043 38919048 TBP TRANSFAC yes 73165209
chr2 38919043 38919049 TFIID TRANSFAC yes 73165210
chr2 38919045 38919051 TBP TRANSFAC yes 73165211
chr2 38919046 38919058 FOXC2 JASPAR yes 73165212
Genes associated with rs556389682[chr2:38919046], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More