EnhancerDB
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  3. rs556558722[chr6:12342356]
Enhancers that have rs556558722[chr6:12342356]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12340945 12361575 enh38802
Astrocyte Colon (HCT116) Pancreas Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs556558722[chr6:12342356]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12342341 12342362 IRF1 JASPAR yes 99963084
chr6 12342342 12342357 FOXP1 JASPAR yes 99963086
chr6 12342347 12342368 IRF1 JASPAR yes 99963090
chr6 12342349 12342356 SPIB JASPAR yes 99963091
chr6 12342349 12342364 PRDM1 JASPAR yes 99963092
chr6 12342352 12342367 FOXP1 JASPAR yes 99963093
chr6 12342353 12342368 STAT2 JASPAR yes 99963094
chr6 12342354 12342369 FOXP1 JASPAR yes 99963095
chr6 12342356 12342371 FOXP1 JASPAR yes 99963096
Genes associated with rs556558722[chr6:12342356], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More