EnhancerDB
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  3. rs556833895[chr1:21588558]
Enhancers that have rs556833895[chr1:21588558]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 21585105 21605175 enh26575
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Liver (HepG2) Prostate (RWPE1) Heart
chr1 21588176 21588724 vista662
VISTA
Transcript factors that have rs556833895[chr1:21588558]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 21586237 21589119 TCF7L2 GTRD no Colon (HCT116) 21325274
chr1 21586237 21589119 TCF7L2 GTRD no Colon (HCT116) 107802345
chr1 21586237 21589119 TCF7L2 GTRD no Colon (HCT116) 107802346
chr1 21588540 21588558 SRF JASPAR yes 27288181
chr1 21588540 21588558 SRF JASPAR yes 118245466
chr1 21588543 21588558 MEF2A JASPAR yes 27288183
chr1 21588543 21588558 MEF2A JASPAR yes 118245468
Genes associated with rs556833895[chr1:21588558], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More