EnhancerDB
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  3. rs556849334[chr2:28855639]
Enhancers that have rs556849334[chr2:28855639]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 28854725 28893200 enh18394
Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs556849334[chr2:28855639]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 28855620 28855641 IRF1 JASPAR yes 72661658
chr2 28855622 28855643 IRF1 JASPAR yes 72661660
chr2 28855626 28855641 FOXP1 JASPAR yes 72661661
chr2 28855626 28855647 IRF1 JASPAR yes 72661662
chr2 28855627 28855648 IRF1 JASPAR yes 72661663
chr2 28855628 28855643 FOXP1 JASPAR yes 72661664
chr2 28855628 28855643 LEF1 JASPAR yes 72661665
chr2 28855628 28855649 IRF1 JASPAR yes 72661666
chr2 28855629 28855650 IRF1 JASPAR yes 72661667
chr2 28855633 28855648 FOXP1 JASPAR yes 72661668
chr2 28855634 28855649 FOXP1 JASPAR yes 72661669
chr2 28855635 28855656 IRF1 JASPAR yes 72661670
Genes associated with rs556849334[chr2:28855639], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More