EnhancerDB
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  3. rs557116578[chr12:52595205]
Enhancers that have rs557116578[chr12:52595205]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr12 52595153 52595538 vista13463
VISTA
Transcript factors that have rs557116578[chr12:52595205]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52595199 52595210 USF2 JASPAR yes 82406420
chr12 52595199 52595210 USF2 JASPAR yes 120927098
chr12 52595200 52595210 TFE3 JASPAR yes 82406421
chr12 52595200 52595210 TFEB JASPAR yes 82406422
chr12 52595200 52595210 TFEC JASPAR yes 82406423
chr12 52595200 52595210 TFE3 JASPAR yes 120927099
chr12 52595200 52595210 TFEB JASPAR yes 120927100
chr12 52595200 52595210 TFEC JASPAR yes 120927101
chr12 52595200 52595211 USF1 JASPAR yes 82406424
chr12 52595200 52595211 USF2 JASPAR yes 82406425
chr12 52595200 52595211 USF1 JASPAR yes 120927102
chr12 52595200 52595211 USF2 JASPAR yes 120927103
chr12 52595201 52595211 MAX JASPAR yes 82406426
chr12 52595201 52595211 MAX JASPAR yes 120927104
chr12 52595202 52595207 MYC TRANSFAC yes 82406427
chr12 52595202 52595207 USF1 TRANSFAC yes 82406428
chr12 52595202 52595207 USF2 TRANSFAC yes 82406429
chr12 52595202 52595207 MYC TRANSFAC yes 120927105
chr12 52595202 52595207 USF1 TRANSFAC yes 120927106
chr12 52595202 52595207 USF2 TRANSFAC yes 120927107
chr12 52595202 52595209 USF1 JASPAR yes 82406430
chr12 52595202 52595209 USF1 JASPAR yes 120927108
chr12 52595205 52595215 RELA JASPAR yes 82406431
chr12 52595205 52595215 REL JASPAR yes 82406432
chr12 52595205 52595215 RELA JASPAR yes 120927109
chr12 52595205 52595215 REL JASPAR yes 120927110
Genes associated with rs557116578[chr12:52595205], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More