EnhancerDB
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  3. rs55728386[chr1:204075645]
Enhancers that have rs55728386[chr1:204075645]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs55728386[chr1:204075645]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204072348 204075940 ZNF274 GTRD no Cervix (HeLa-S3) 21370174
chr1 204072348 204075940 ZNF274 GTRD no Cervix (HeLa-S3) 107859645
chr1 204072392 204077605 ZNF143 GTRD no Epithelial (MCF-7) 21370176
chr1 204072392 204077605 ZNF143 GTRD no Epithelial (MCF-7) 107859647
chr1 204072512 204075869 ZNF143 GTRD no Epithelial (MCF-7) 21370177
chr1 204072512 204075869 ZNF143 GTRD no Epithelial (MCF-7) 107859648
chr1 204072587 204077369 ZNF143 GTRD no Epithelial (MCF-7) 21370178
chr1 204072587 204077369 ZNF143 GTRD no Epithelial (MCF-7) 107859649
chr1 204072654 204075875 ZNF143 GTRD no Epithelial (MCF-7) 21370180
chr1 204072654 204075875 ZNF143 GTRD no Epithelial (MCF-7) 107859651
chr1 204072721 204075685 ZNF274 GTRD no Cervix (HeLa-S3) 21370186
chr1 204072721 204075685 ZNF274 GTRD no Cervix (HeLa-S3) 107859657
chr1 204072758 204076983 ZNF143 GTRD no Epithelial (MCF-7) 21370190
chr1 204072758 204076983 ZNF143 GTRD no Epithelial (MCF-7) 107859661
chr1 204072763 204075771 ZNF143 GTRD no Epithelial (MCF-7) 21370192
chr1 204072763 204075771 ZNF143 GTRD no Epithelial (MCF-7) 107859663
chr1 204072767 204076302 ZNF143 GTRD no Epithelial (MCF-7) 21370193
chr1 204072767 204076302 ZNF143 GTRD no Epithelial (MCF-7) 107859664
chr1 204072773 204075759 ZNF143 GTRD no Epithelial (MCF-7) 21370194
chr1 204072773 204075759 ZNF143 GTRD no Epithelial (MCF-7) 107859665
chr1 204072790 204075758 ZNF143 GTRD no Epithelial (MCF-7) 21370196
chr1 204072790 204075758 ZNF143 GTRD no Epithelial (MCF-7) 107859667
chr1 204072812 204075771 ZNF143 GTRD no Epithelial (MCF-7) 21370199
chr1 204072812 204075771 ZNF143 GTRD no Epithelial (MCF-7) 107859671
chr1 204072824 204076087 ZNF274 GTRD no Liver (HepG2) 21370200
chr1 204072824 204076087 ZNF274 GTRD no Liver (HepG2) 107859672
chr1 204072834 204075685 ZNF143 GTRD no Epithelial (MCF-7) 21370201
chr1 204072834 204075685 ZNF143 GTRD no Epithelial (MCF-7) 107859673
chr1 204072837 204075928 ZBTB33 GTRD no Lung (A549) 21370202
chr1 204072837 204075928 ZBTB33 GTRD no Lung (A549) 107859674
chr1 204072841 204075680 ZNF274 GTRD no Liver (HepG2) 21370203
chr1 204072841 204075680 ZNF274 GTRD no Liver (HepG2) 107859675
chr1 204072853 204075668 ZNF274 GTRD no Liver (HepG2) 21370205
chr1 204072853 204075668 ZNF274 GTRD no Liver (HepG2) 107859677
chr1 204072869 204075797 ZNF143 GTRD no Epithelial (MCF-7) 21370210
chr1 204072869 204075797 ZNF143 GTRD no Epithelial (MCF-7) 107859682
chr1 204072879 204075708 ZNF274 GTRD no Liver (HepG2) 21370211
chr1 204072879 204075708 ZNF274 GTRD no Liver (HepG2) 107859683
chr1 204072881 204075650 ZNF274 GTRD no Liver (HepG2) 21370212
chr1 204072881 204075650 ZNF274 GTRD no Liver (HepG2) 107859684
chr1 204072897 204075721 ZNF274 GTRD no Liver (HepG2) 21370214
chr1 204072897 204075721 ZNF274 GTRD no Liver (HepG2) 107859686
chr1 204072910 204075673 ZNF274 GTRD no Liver (HepG2) 21370216
chr1 204072910 204075673 ZNF274 GTRD no Liver (HepG2) 107859688
chr1 204072922 204075704 ZNF143 GTRD no Epithelial (MCF-7) 21370222
chr1 204072922 204075704 ZNF143 GTRD no Epithelial (MCF-7) 107859694
chr1 204073878 204076313 ZNF274 GTRD no Liver (HepG2) 21370277
chr1 204073878 204076313 ZNF274 GTRD no Liver (HepG2) 107859756
chr1 204073917 204075770 ZNF274 GTRD no Liver (HepG2) 21370279
chr1 204073917 204075770 ZNF274 GTRD no Liver (HepG2) 107859758
chr1 204073918 204075860 ZNF274 GTRD no Liver (HepG2) 21370280
chr1 204073918 204075860 ZNF274 GTRD no Liver (HepG2) 107859759
chr1 204074200 204075731 ZNF274 GTRD no Liver (HepG2) 21370293
chr1 204074200 204075731 ZNF274 GTRD no Liver (HepG2) 107859774
chr1 204075631 204075646 MEF2C JASPAR yes 34680777
chr1 204075639 204075660 IRF1 JASPAR yes 34680778
chr1 204075640 204075661 IRF1 JASPAR yes 34680779
chr1 204075642 204075663 IRF1 JASPAR yes 34680780
chr1 204075644 204075659 FOXP1 JASPAR yes 34680781
chr1 204075645 204075660 FOXP1 JASPAR yes 34680782
Genes associated with rs55728386[chr1:204075645], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More