EnhancerDB
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  3. rs557678909[chr17:62999129]
Enhancers that have rs557678909[chr17:62999129]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs557678909[chr17:62999129]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62998989 62999447 ZNF274 GTRD no Bone Marrow (K562) 21780993
chr17 62999119 62999131 NHLH1 JASPAR yes 55337985
chr17 62999119 62999134 SCRT1 JASPAR yes 55337986
chr17 62999120 62999130 ID4 JASPAR yes 55337987
chr17 62999120 62999130 NHLH1 JASPAR yes 55337988
chr17 62999120 62999130 TCF3 JASPAR yes 55337989
chr17 62999120 62999130 TCF4 JASPAR yes 55337990
chr17 62999121 62999130 SNAI2 JASPAR yes 55337991
chr17 62999129 62999133 H4TF2 TRANSFAC yes 55337993
Genes associated with rs557678909[chr17:62999129], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More