EnhancerDB
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  3. rs557765539[chr11:130383385]
Enhancers that have rs557765539[chr11:130383385]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 130376930 130403235 enh14405
Astrocyte Pancreas Uterus Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs557765539[chr11:130383385]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 130383267 130383961 SOX2 GTRD no Neural Stem Cells (H9) 21523905
chr11 130383270 130384305 ZBTB33 GTRD no Brain (SK-N-SH) 21523906
chr11 130383288 130384309 ZBTB33 GTRD no Brain (SK-N-SH) 21523907
chr11 130383317 130383700 SOX2 GTRD no Neural Stem Cells (H9) 21523908
chr11 130383325 130384421 MYOD GTRD no Muscle (Myoblast) 21523909
chr11 130383336 130384426 ZBTB33 GTRD no Brain (SK-N-SH) 21523910
chr11 130383339 130384095 ZBTB33 GTRD no Brain (SK-N-SH) 21523911
chr11 130383346 130384414 ZBTB33 GTRD no Brain (SK-N-SH) 21523912
chr11 130383347 130383718 SOX2 GTRD no Neural Stem Cells (H9) 21523913
chr11 130383348 130384205 ZBTB33 GTRD no Brain (SK-N-SH) 21523914
chr11 130383375 130383392 RARA JASPAR yes 42438536
Genes associated with rs557765539[chr11:130383385], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More