EnhancerDB
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  3. rs55781948[chr1:2173811]
Enhancers that have rs55781948[chr1:2173811]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 2162230 2193653 enh11423
Bone Marrow (K562) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs55781948[chr1:2173811]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 2173800 2173811 FOXA1 JASPAR yes 26225868
chr1 2173803 2173817 XBP1 JASPAR yes 26225869
chr1 2173809 2173814 ATF1 TRANSFAC yes 26225870
Genes associated with rs55781948[chr1:2173811], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 1243947 1247057 + PUSL1 ENSG00000169972.7 1243947 926754 Stomach 0.372978 25